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Home • nmodel • Reconstruction Information
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Reconstruction Information
Microscopy product ID: 8244
Image basename: nmodel

Reconstruction description
Reconstruction description The raw series had 1560 planes total, but there is no information available as to why some planes were left off the reconstruction.
Full-resolution reconstruction file Full resolution file in IMOD format. The raw series had 1560 planes total, but there is no information available as to why some planes were left off the reconstruction.
Down-sampled version of the reconstruction file Volume binned by a factor of 2 in the x, y and z planes: 2048 X 2048 X 632 slices
Image map file  
Reconstruction file format MRC
Volume dimension (4096.0, 4096.0, 1266.0) pixels
Voxel scale (0.047, 0.047, 0.06) µm
Reconstruction type serial section electron microsco
Reconstruction Program
Reconstruction algorithm
Reconstruction date
Correlated volume name
Deconvolution program
Deconvolution algorithm
Deconvolution iterators
Missing angles
Alignment method
Alignment program
Fiducial mark file
Cropping coordinates 1
Cropping coordinates 2
Fewer details
Animation
Animation showing the segmentation of individual neurons from a reconstruction of Golgi-impregnated mouse neocortex using serial block face SEM. Segmentation files are available for download under the segmentation section.
Data files
Action File type File size Description
Download 512x512 image Unknown Golgi impregnated pyramidal neurons in the neocortex of an adult mouse. Contrast is reversed so that Golgi stain appears bright against the unstained background. A maximum intensity projection of the dataset is available in the thumbnail and by clicking the JPEG tab.
Download Reconstruction data file 19.78GB Full resolution file in IMOD format. The raw series had 1560 planes total, but there is no information available as to why some planes were left off the reconstruction.
Download Downsampled data file 2.47GB Volume binned by a factor of 2 in the x, y and z planes: 2048 X 2048 X 632 slices
Download Animation video 118.21MB Animation showing the segmentation of individual neurons from a reconstruction of Golgi-impregnated mouse neocortex using serial block face SEM. Segmentation files are available for download under the segmentation section.

Description: Golgi impregnated pyramidal neurons in the neocortex of an adult mouse. Contrast is reversed so that Golgi stain appears bright against the unstained background. A maximum intensity projection of the dataset is available in the thumbnail and by clicking the JPEG tab.

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Description: Golgi impregnated pyramidal neurons in the neocortex of an adult mouse. Contrast is reversed so that Golgi stain appears bright against the unstained background. A maximum intensity projection of the dataset is available in the thumbnail and by clicking the JPEG tab.
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